Release notes

We recommend using the latest available AIRRSHIP release. If you have already installed an earlier version then you may have to upgrade your installed version using pip.

pip install airrship -U

v0.1.0

Initial release.

v0.1.1

Bug fix: the --shm_random option no longer produces an error.

v0.1.2

Adjustments to ensure that proportional VDJ usage is accurately recreated from reference files.

v0.1.3

Added option for including non-productive sequences in output. Added --shm_multiplier option to control mutation rates.

v0.1.4

Yanked. Issue with Python 3.7 compatibility.

v0.1.5

Included --species option to make simulating non-human species using user specified data easier.

Warning

Default values for --het have changed to 0 0 0. This differs from previous releases where the default behaviour was to use the greatest proportion of heterozygous positions possible in the inbuilt data.